IGVFFI2602PUBJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2020PTEI(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G3_P073_L002_I1

md5sum

09b8ec80843e7ece7740fe0962d11a1d

Content MD5sum

c73c7648a3bf64cf40ebce1eaa31bd62

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X056_G3_L003_P073_S11_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

164544670

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5894OFIJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples