IGVFFI2599SDEC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6455YIYD(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G1_P057_L004_R2

md5sum

003b70175ef0cf69b40037d3d8701555

Content MD5sum

da18c3adbf1fe66fa43870377bf24eb4

File Size

646 MB

Submitted File Name

Multiome_ATAC_RP009_G1_L001_P057_S9_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

37240411

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3842WIDQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples