IGVFFI2598QMEO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7477IHEZ(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G5_P057_L001_R2

md5sum

a529ddf07f5cd14e74ac752f5bc764a8

Content MD5sum

6cebc1823f4ee1e4b5037b44db9218a4

File Size

814 MB

Submitted File Name

Multiome_ATAC_RP009_G5_L005_P057_S13_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

47417089

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3999SNMB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples