IGVFFI2587QJOS

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2587QJOS/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2587QJOS",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_4396_R2"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "0a935f725459d2cd7f31a849a001bf32",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2024-08-20T15:31:10.585945+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS5168HWYG/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5168HWYG",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002764/",
38            "term_name": "single-cell ATAC-seq"
39        },
40        "controlled_access": true,
41        "data_use_limitation_summaries": [
42            "GRU"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/in-vitro-systems/IGVFSM5185VHNY/",
48                "@type": [
49                    "InVitroSystem",
50                    "Biosample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM5185VHNY",
55                "classifications": [
56                    "cell line",
57                    "pooled cell specimen"
58                ],
59                "sample_terms": [
60                    {
61                        "@id": "/sample-terms/EFO_0004905/",
62                        "status": "released",
63                        "term_name": "induced pluripotent stem cell"
64                    }
65                ],
66                "status": "released",
67                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 204)",
68                "taxa": "Homo sapiens"
69            }
70        ],
71        "status": "released",
72        "summary": "single-cell ATAC-seq (SHARE-seq)"
73    },
74    "file_size": 2420080323,
75    "flowcell_id": "22JMFMLT3",
76    "gene_list_for": [],
77    "href": "/sequence-files/IGVFFI2587QJOS/@@download/IGVFFI2587QJOS.fastq.gz",
78    "illumina_read_type": "R2",
79    "input_file_for": [],
80    "integrated_in": [],
81    "lab": {
82        "@id": "/labs/jason-buenrostro/",
83        "title": "Jason Buenrostro, Broad"
84    },
85    "loci_list_for": [],
86    "maximum_read_length": 100,
87    "md5sum": "5287a8bc064acbe1cfbc9d2aaea2567f",
88    "mean_read_length": 100,
89    "minimum_read_length": 100,
90    "quality_metrics": [],
91    "read_count": 60848069,
92    "read_names": [
93        "Read 2"
94    ],
95    "release_timestamp": "2025-04-22T04:12:04.103926+00:00",
96    "s3_uri": "s3://igvf-restricted-files/2024/08/20/5b8d3a8e-805a-458f-b2cd-dd56928d430a/IGVFFI2587QJOS.fastq.gz",
97    "schema_version": "15",
98    "seqspecs": [
99        "/configuration-files/IGVFFI3122IQBP/"
100    ],
101    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
102    "sequencing_platform": {
103        "@id": "/platform-terms/EFO_0022840/",
104        "status": "released",
105        "term_name": "Illumina NovaSeq X"
106    },
107    "sequencing_run": 4396,
108    "status": "released",
109    "submitted_by": {
110        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
111        "title": "Siddarth Wekhande"
112    },
113    "submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/07e69bd4-7fc9-44f3-915e-796979c95b5f/wf_create_fastq_barcode/6a234de0-09ad-4918-a872-873e8379e9da/call-create_fastq_barcode/shard-0/SS-CoPA-1498_L4_SS-PKR-204_SS-V1-1st-THIRD_R2.R2.fastq.gz",
114    "summary": "R2 reads from sequencing run 4396",
115    "upload_status": "validated",
116    "uuid": "5b8d3a8e-805a-458f-b2cd-dd56928d430a"
117}