IGVFFI2581NUZH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1060QORL(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G7_P060_L007_I2

md5sum

d0dc0bfac9166fe23ec20a14bd5c4111

Content MD5sum

f8a137ba3605f5567e571db150b3c172

File Size

486 MB

Submitted File Name

Multiome_RNA_RP010_G7_L007_P060_S46_L007_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

79824687

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9956HBLE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples