IGVFFI2576YRDI

released

validated

File Set

IGVFDS8765QBBH(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_FAM3C_Auxin0hrs-FF1-BinF-PCR1-Rep1_S114

md5sum

cdc260d5afda6a55aae5d9e7fd9f595f

Content MD5sum

23dac184d05af8cfe82189be1453afab

File Size

22 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/FAM3C-Auxin0hrs-FF1-BinF-PCR1-Rep1_S114_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TCTGGCGA:CCAG

Average Read Length

Read Count

1021683

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM6177XAAS

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of FAM3C) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library