IGVFFI2559VSZB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7453IBHQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP021_G3_P067_L003_R1

md5sum

36c3be6f26fa6b574004b746462c096d

Content MD5sum

71f818cf5cb3141b0339bb037a6ffd63

File Size

2.2 GB

Submitted File Name

Multiome_ATAC_RP021_G3_L003_P067_S1_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72334791

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8178OHJY

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 88 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 80 years) substantia nigra tissue associated with Parkinson's disease; ... and 14 more samples