IGVFFI2558YTTR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0421QOQA(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G2_P007_L003_I1

md5sum

c9afafe4db3ae3d120b32778d2e94740

Content MD5sum

ec876729f0dd69dc0720c5b8febf30e9

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_X009_G2_L002_P007_S22_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

288805230

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6928XXNG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples