IGVFFI2541CARK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2952XLAO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G2_P075_L004_R2

md5sum

b2fb661d85713f86b501b4a9b36925d6

Content MD5sum

1a628d9956687c156f456372aaa53409

File Size

3.0 GB

Submitted File Name

Multiome_ATAC_RP026_G2_L002_P075_S18_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

172378616

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9641MJVP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples