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INDEXED
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SequenceFile
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IGVFFI2517LVUD
IGVFFI2517LVUD
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4675LCCM
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP009_G1_P058_L003_I1
md5sum
9382f961e12ebf83c7cb4fcb8eb0a3b1
Content MD5sum
a59fd350f1f9ebed807c1ccb65eefa1d
File Size
325 MB
Submitted File Name
Multiome_RNA_RP009_G1_L001_P058_S9_L003_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223HCCLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
54298277
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3842WIDQ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples