{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI2516NZRA/",
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"File",
"Item"
],
"accession": "IGVFFI2516NZRA",
"aliases": [
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],
"assay_titles": [
"10x multiome"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "dcb3c2b50a8126f9fe385c551cef7509",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:19:44.334179+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS0615WYVU/",
"@type": [
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"FileSet",
"Item"
],
"accession": "IGVFDS0615WYVU",
"assay_term": {
"@id": "/assay-terms/OBI_0002762/",
"term_name": "single-nucleus ATAC-seq"
},
"file_set_type": "experimental data",
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{
"@id": "/multiplexed-samples/IGVFSM1595JOHE/",
"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM1595JOHE",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "mild cognitive impairment",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "Parkinson's disease",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"@type": [
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"Item"
],
"status": "in progress",
"summary": "multiple sclerosis",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "cerebral amyloid angiopathy",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"@type": [
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],
"status": "released",
"summary": "Alzheimer disease",
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}
],
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"sample_terms": [
{
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"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
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"term_name": "substantia nigra"
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{
"@id": "/sample-terms/UBERON_0002740/",
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}
],
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"taxa": "Homo sapiens",
"treatments": []
}
],
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},
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"href": "/sequence-files/IGVFFI2516NZRA/@@download/IGVFFI2516NZRA.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lane": 6,
"loci_list_for": [],
"maximum_read_length": 24,
"md5sum": "f06a53e2121757eea0eb66c2227f5a13",
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"minimum_read_length": 24,
"quality_metrics": [],
"read_count": 149302757,
"read_names": [
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"schema_version": "15",
"seqspecs": [],
"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq X"
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"submitted_by": {
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"title": "Ryan Corces"
},
"submitted_file_name": "Multiome_ATAC_RP031_G4_L004_P079_S12_L006_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "8cafc07b-a278-456e-96c3-aebc6bfe3b14"
}