IGVFFI2515NRZB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0605XEYP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X031_G5_P032_L004_R2

md5sum

45a98d4a64164e63e58371f6a5bf0adf

Content MD5sum

d026d400000f0d4665836fc8413e608e

File Size

15 GB

Submitted File Name

Multiome_RNA_X031_G5_L005_P032_S47_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

273520795

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1592CVNB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples