IGVFFI2514NNAS

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3202JLFH(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep1-FFRep3-BinB-PCRRep1_R1
md5sum
b9de30c4552fc112b1b1728332531fea
Content MD5sum
cd7624e7e0da787dcd76dfc7f6116fd7
File Size
61 KB
Submitted File Name
Jurkat_Stim-IL2RA_prom-BioRep1-FFRep3-PCRRep1-BinB_S10_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Illumina Read Type
R1
Index
AACAATGG:TTGT
Average Read Length
150
Read Count
1822

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of IL2RA) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
variant effects
variant effects
Jesse Engreitz, Stanford
5.9 KB
validated

Attribution