{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI2511SPLG/",
"@type": [
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],
"accession": "IGVFFI2511SPLG",
"aliases": [
"jay-shendure:bulkMPRA_devCRE_mEBs_repB_day16_DNA_R2"
],
"assay_titles": [
"MPRA"
],
"audit": {},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"content_md5sum": "876cdf35738e5cbe8e168a2e9bcf09f9",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:56:53.188755+00:00",
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"file_format": "fastq",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS2965JJYR/",
"accession": "IGVFDS2965JJYR",
"file_set_type": "quantification DNA barcode sequencing",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM8780MGRB/",
"accession": "IGVFSM8780MGRB",
"classifications": [
"differentiated cell specimen"
],
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{
"@id": "/sample-terms/EFO_0004038/",
"status": "released",
"term_name": "mouse embryonic stem cell"
}
],
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"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci"
},
"file_size": 205514243,
"flowcell_id": "HNGFGBGXL",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI2511SPLG/@@download/IGVFFI2511SPLG.fastq.gz",
"illumina_read_type": "R2",
"input_file_for": [
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"/tabular-files/IGVFFI4223UWJR/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
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"maximum_read_length": 8,
"md5sum": "538c45ef0b0d3fabca72c88835cdf0db",
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"read_count": 20622352,
"release_timestamp": "2024-06-27T00:41:19.825001+00:00",
"s3_uri": "s3://igvf-files/2023/12/09/342494f2-fa2f-49d7-bd6e-4160045d25bf/IGVFFI2511SPLG.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NextSeq 500"
},
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"status": "released",
"submitted_by": {
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"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/bulkMPRA_devCRE_mEBs/bulk_MPRA_mEB_series_mBC_repB_d16_DNA_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "342494f2-fa2f-49d7-bd6e-4160045d25bf"
}