IGVFFI2511MROU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5068FHJE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X048_G1_P050_L002_R1

md5sum

39bd7c5a671175831da03dae56c96e74

Content MD5sum

513a1aeb10da15f53021c940fa22082c

File Size

10 GB

Submitted File Name

Multiome_RNA_X048_G1_L001_P050_S17_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

158881138

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0003NWYI

MultiplexedSample

posterior cingulate gyrus, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 93 years) substantia nigra tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples