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IGVFFI2507OKEP
IGVFFI2507OKEP
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6874YIXA
(prime editing Variant-EFFECTS)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:Jurkat_Stim-IL2RA_prom-NegControl-PCRRep4_I1
md5sum
48af1f7fb92e3e2db389b1fbe570e753
Content MD5sum
0720cb4bfc4ece29e856767ee365992f
File Size
2.9 KB
Submitted File Name
Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-PCRRep4-BinNeg_S196_I1_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Illumina Read Type
I1
Index
ACAGGTAT:CCTG
Average Read Length
8
Read Count
53
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7816WZNZ
InVitroSystem
Jurkat
Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9903UNGI
tsv
variant effects
variant effects
Jesse Engreitz, Stanford
5.9 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford