IGVFFI2504WJZR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4033UDFN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X045_G8_P045_L001_R2

md5sum

6b726b1084543ab3a40c2bebecacfd9a

Content MD5sum

f43f66a0953d50a10f84e9376584dfed

File Size

4.7 GB

Submitted File Name

Multiome_ATAC_X045_G8_L008_P045_S12_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

275776639

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3519VNVW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples