IGVFFI2500NBYH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6012ICRP(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X024_G5_P024_L004_R1

md5sum

274d9280ad059a024d754e894a8d0bed

Content MD5sum

7ead8d31fd0f41d46883ddfcb2cf34c7

File Size

15 GB

Submitted File Name

Multiome_RNA_X024_G5_L005_P024_S43_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

231719702

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3845CORI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples