IGVFFI2496EHJS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1915WBYK(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP029_G3_P077_L005_I1

md5sum

92a8bfa0835888fd1d1be113a3264043

Content MD5sum

fd25d570e6129b956f1e7d4856d3e344

File Size

546 MB

Submitted File Name

Multiome_ATAC_RP029_G3_L003_P077_S29_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

79616332

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0019MOAR

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples