{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI2494SJJP/",
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"File",
"Item"
],
"accession": "IGVFFI2494SJJP",
"aliases": [
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],
"assay_titles": [
"10x multiome"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "aaad5ac429cd127ac9e81c621164c52a",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T17:11:31.171419+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS3214ILJT/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3214ILJT",
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"term_name": "single-nucleus RNA sequencing assay"
},
"file_set_type": "experimental data",
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{
"@id": "/multiplexed-samples/IGVFSM9488DNCQ/",
"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM9488DNCQ",
"classifications": [
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"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "Parkinson's disease",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "multiple sclerosis",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "cerebral amyloid angiopathy",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "released",
"summary": "Alzheimer disease",
"term_name": "Alzheimer disease"
}
],
"modifications": [],
"sample_terms": [
{
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"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
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"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
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"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
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"term_name": "middle temporal gyrus"
}
],
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"taxa": "Homo sapiens",
"treatments": []
}
],
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"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
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"href": "/sequence-files/IGVFFI2494SJJP/@@download/IGVFFI2494SJJP.fastq.gz",
"illumina_read_type": "I2",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lane": 3,
"loci_list_for": [],
"maximum_read_length": 10,
"md5sum": "e5eb7c661ce9e750d144a8a18c32d956",
"mean_read_length": 10,
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"s3_uri": "s3://igvf-files/2025/03/20/81df5b81-f11f-4b14-91a0-906a3a976fe5/IGVFFI2494SJJP.fastq.gz",
"schema_version": "15",
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"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq X"
},
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"status": "preview",
"submitted_by": {
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"title": "Ryan Corces"
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"submitted_file_name": "Multiome_RNA_RP009_G8_L008_P058_S16_L003_I2_001.fastq.gz",
"summary": "I2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "81df5b81-f11f-4b14-91a0-906a3a976fe5"
}