IGVFFI2479EEFZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3270YULL(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep2-BinD-PCRRep2_R1

md5sum

0e9bf9a91e150ec92d0871884e6cc671

Content MD5sum

5f1f428688d46c922632b0abcd3c81b6

File Size

6.0 MB

Submitted File Name

Jurkat_Stim-IL2RA_prom-BioRep2-FFRep2-PCRRep2-BinD_S44_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Illumina Read Type

Index

TATCTGCC:TTGT

Average Read Length

150

Read Count

202187

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM4553KVCE

InVitroSystem

Jurkat

Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of IL2RA) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library