IGVFFI2471FTHW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6561ZEIK(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G3_P057_L004_R3

md5sum

5cc4c0f082279c82ca934268cf936d51

Content MD5sum

04d309cb650f2e435b4c5d2fe84610ab

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP009_G3_L003_P057_S11_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

463444100

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6201VKVB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples