IGVFFI2466QFLR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4763QFYG(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G7_P071_L006_I1

md5sum

ed19388bb0976bcf2b97ce2a72396171

Content MD5sum

1761ad268a4effe285869936962f90e0

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_X052_G7_L007_P071_S43_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

184890155

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3279OAJX

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples