IGVFFI2453AHMS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3466DKVY(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G4_P053_L001_R2

md5sum

8b466c329d66082ae4c3549d1049f235

Content MD5sum

eb5a6684cd8759a2a7ac4fbe610504d1

File Size

941 MB

Submitted File Name

Multiome_ATAC_RP005_G4_L004_P053_S20_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54494452

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3046HYHX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples