IGVFFI2452BVVW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6345JTFM(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G2_P065_L005_I1

md5sum

e6232fd0a2de7a24d7c3702440913c83

Content MD5sum

db47395e3e89573b6478e19433c628dd

File Size

505 MB

Submitted File Name

Multiome_ATAC_X050_G2_L002_P065_S32_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65975935

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8296KGSW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples