IGVFFI2450SNXN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3802KJSR(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G5_P061_L003_R2

md5sum

0c0eea35687e4e7e9b6d7124005ea6df

Content MD5sum

e86011a0cfb450416137dbfa0f588f5f

File Size

893 MB

Submitted File Name

Multiome_ATAC_RP014_G5_L005_P061_S13_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

50978270

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5142KRLD

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples