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INDEXED
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SequenceFile
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IGVFFI2449RSAD
IGVFFI2449RSAD
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3171AYJR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G4_P056_L008_I2
md5sum
c58546c62c56982e7f298c7173bd40eb
Content MD5sum
03170fd659efe3e88f5d30b2eb1ceae2
File Size
319 MB
Submitted File Name
Multiome_RNA_RP006_G4_L004_P056_S83_L008_I2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHVLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
48558281
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9866POVO
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples