IGVFFI2448LSTW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3732KKVV(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP012_G6_P059_L006_R2

md5sum

6e2afe819de3dbb2ca915c103cf0ff21

Content MD5sum

0b1b003cf3e07babe7d9e03e5701e218

File Size

948 MB

Submitted File Name

Multiome_ATAC_RP012_G6_L006_P059_S86_L006_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53860623

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5046SGAL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples