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IGVFFI2448CGYC

released
validated
File Set
IGVFDS3908QZCZ(lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide)
Summary
R3 reads from sequencing run 4
File Format
fastq
Content Type
reads
md5sum
26123fa68939e469c7242ada4fdd341c
Content MD5sum
6e2720f8660c92b59fdc390966cf546c
File Size
317 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/HEK293T/run4/293T-RNA-2_S4_R3_001.fastq.gz"
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
seqrun4
Attribution
Nadav Ahituv, UCSF

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
4
Sequencing Kit
NextSeq 500 High Output v2 Kit
Illumina Read Type
R3
Average Read Length
15
Read Count
19605839

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) HEK293T pooled cell specimen transduced (lentivirus) with a reporter library

Files Derived From This File

3 items
tsv
reporter experiment
GRCh38 reporter experiment
Nadav Ahituv, UCSF
19 MB
validated
tsv
reporter experiment barcode
GRCh38 reporter experiment barcode
Nadav Ahituv, UCSF
216 MB
validated
tsv
reporter experiment
GRCh38 reporter experiment
Nadav Ahituv, UCSF
18 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI7127EXHP, IGVFFI0809FYWC, IGVFFI2206LAVD, IGVFFI7403QKPK, IGVFFI7878SRXH, IGVFFI2448CGYC, IGVFFI2833RDQR, IGVFFI0375WKDI, IGVFFI0558ORBM
Nadav Ahituv, UCSF
1.6 KB
validation exempted