IGVFFI2446CVAE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7843JHRO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G4_P041_L004_R2

md5sum

1b3e85ef208485a2049839f4dba8cb39

Content MD5sum

dc1d4d183bc354cbd781117a19d3eade

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_X041_G4_L004_P041_S14_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68934173

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0728SZZR

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples