IGVFFI2427QSLK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6077CQVA(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G6_P041_L004_R1

md5sum

acfc38f97b40608ea2cfc9bc295ff4f8

Content MD5sum

85f1da3135ef7ac197a4cf6489854d9b

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_X041_G6_L006_P041_S16_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53378553

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0027DAWZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples