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IGVFFI2427ACWP

released
validated
File Set
IGVFDS1427CODJ(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp18_atac_10x1_NGS1_r1
md5sum
7b967e3ced3d09bdf757fb025f2256e3
Content MD5sum
7d1ddf49bd71255a13c7d11fff949d86
File Size
22 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf18/ATAC/ATAC1-CMAS23A_S33_L006_R1_001.fastq.gz
Checkfiles Version
v14

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22FL7YLT4
Lane
1
Sequencing Kit
NovaSeq X Series 25B Reagent Kit
Illumina Read Type
R1
Average Read Length
50
Read Count
724414038

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
4.9 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2427ACWP, IGVFFI2590TULH, IGVFFI4076GAUO, IGVFFI7773BPEF
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford