IGVFFI2426JYAI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6904QKJC(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X056_G8_P073_L002_R2

md5sum

8e8512b6acb65d5ec5ffe4e8c3dd7c00

Content MD5sum

4d4f2c96a44d51fc8f916ed2fa6151e3

File Size

3.2 GB

Submitted File Name

Multiome_ATAC_X056_G8_L008_P073_S16_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

187218470

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3458KTYQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples