IGVFFI2414AHMQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4263YTZD(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X046_G5_P048_L004_R2

md5sum

1fcb7944fdf4aa37742673eb7c036d1e

Content MD5sum

64a25c64205366830ff4b9beac6db09a

File Size

15 GB

Submitted File Name

Multiome_RNA_X046_G5_L005_P048_S17_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

305697221

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2300MKEN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples