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INDEXED
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SequenceFile
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IGVFFI2414AFBB
IGVFFI2414AFBB
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS9355RKER
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP018_G3_P064_L004_R2
md5sum
619e7cf564cb3a6b3c443a16ae934a9e
Content MD5sum
521f905d11f622ce59002b247d670c58
File Size
3.3 GB
Submitted File Name
Multiome_RNA_RP018_G3_L003_P064_S11_L004_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223H55LT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
75844194
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0275PBUR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples