IGVFFI2410OKWB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7013MCCH(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G6_P060_L008_I1

md5sum

336d423fd78de77c58823be0fc66c97d

Content MD5sum

f86ff033f4a7c82bd334661971568a04

File Size

328 MB

Submitted File Name

Multiome_RNA_RP012_G6_L006_P060_S38_L008_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

49679713

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5046SGAL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples