IGVFFI2405GOYQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2391MEXB(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G3_P061_L004_R1

md5sum

5f4e0379f179eb582add58c532e4ba99

Content MD5sum

da9823795902c82542ccf555c2798c3f

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP013_G3_L003_P061_S3_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56921954

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2861OAVH

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples