IGVFFI2401UVFI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5171FIDH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X014_G7_P013_L001_R1

md5sum

af1df71cd350b04678136d0360779ed5

Content MD5sum

e95f5486cbeb9d93d7540a5e61d6873d

File Size

4.9 GB

Submitted File Name

Multiome_ATAC_X014_G7_L007_P013_S5_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

156936573

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3915PNAB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) cerebellar cortex tissue; Homo sapiens (male, 80 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples