IGVFFI2400JUQO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3238TJDX(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 2

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP005_G7_P056_L004_I1

md5sum

578798843314cf8a1ee216943e446409

Content MD5sum

0b1977fa63e9499bfe0b289a316f1c06

File Size

506 MB

Submitted File Name

Multiome_RNA_RP005_G7_L007_P056_S19_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225LGWLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

86992735

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3222RGNB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples