IGVFFI2399IXPF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1915WBYK(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP029_G3_P077_L003_I1

md5sum

3163bb98656c016d68077a1efecd51f6

Content MD5sum

4f5537d4627526513a93c9cec94acc53

File Size

544 MB

Submitted File Name

Multiome_ATAC_RP029_G3_L003_P077_S29_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

78676195

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0019MOAR

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples