IGVFFI2399HIWL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6751EKJB(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G8_P051_L005_R1

md5sum

7709f498e53801823c85c7415088557b

Content MD5sum

3d806e9f6e988b9f79c5f8454c0d4505

File Size

2.7 GB

Submitted File Name

Multiome_ATAC_RP001_G8_L008_P051_S28_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

92878784

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4595ROAA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples