IGVFFI2399EVTA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6932ECNS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X042_G6_P043_L006_I1

md5sum

5bfe8490ada9670a3aa27d0d1ef60524

Content MD5sum

432e1f0c3f6edc6bc7b4ed22c0a071b6

File Size

383 MB

Submitted File Name

Multiome_ATAC_X042_G6_L006_P043_S24_L006_I1_001.fastq.gz

Checkfiles Version

v20

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51426271

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1167MABH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples

Attribution

Award

HG012076

Principal Investigator(s)

Ansuman Satpathy

Contact P.I.

Ansuman Satpathy

Lab

Ryan Corces, Gladstone Institute UCSF