IGVFFI2398VVPH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9743TYOT(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-BinB-PCRRep1_I2

md5sum

16a44e597b9497e454414b566e747108

Content MD5sum

ecdad085406d976a62415fbd0e93988b

File Size

1.6 MB

Submitted File Name

Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-PCRRep1-BinB_S14_I2_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Illumina Read Type

Index

GGTCCAGA:TTGT

Average Read Length

Read Count

200355

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM1469NQHM

InVitroSystem

Jurkat

Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of IL2RA) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library