IGVFFI2392NGTP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6991WMGS(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP008_G8_P058_L004_I1

md5sum

875206e689bb54735e7c15e0d9876b0f

Content MD5sum

69526470e28735e338b727ae9a602499

File Size

361 MB

Submitted File Name

Multiome_RNA_RP008_G8_L008_P058_S8_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67585459

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9455XPMQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples