IGVFFI2391JNCT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6532IRJT(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X042_G4_P044_L008_R2

md5sum

790cf6fb15ba99337c3a322da0b9744a

Content MD5sum

b8a3625516412e7e41e30e8569c950c2

File Size

2.4 GB

Submitted File Name

Multiome_RNA_X042_G4_L004_P044_S22_L008_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56605187

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6255JGZM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples