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INDEXED
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SequenceFile
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IGVFFI2389UFTL
IGVFFI2389UFTL
released
validated
Json view
File Set
IGVFDS1581RZTR
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_rna_10x6_NGS4_r2
md5sum
1393fc7af427af2065ad08ad5a835ab6
Content MD5sum
83e8743a4fd58d1fde2c90b33407cc76
File Size
7.3 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/GEX/FASTQ/GEX6_S6_L004_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225LWLLT3
Lane
4
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
171258422
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5574TAPU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI0640HONP
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
174 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4545HJOV
yaml
seqspec
seqspec of IGVFFI8573LEPO, IGVFFI0853LYNL, IGVFFI2389UFTL, IGVFFI6200FDZP
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford