IGVFFI2385UBQG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5874OMSN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X020_G1_P019_L003_R2

md5sum

e91576f682e6fb2fdabff8d806bde80a

Content MD5sum

f837c79fcaea0634ce0739ca03b59052

File Size

3.8 GB

Submitted File Name

Multiome_ATAC_X020_G1_L001_P019_S33_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

221288208

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8305BIVT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples