{
"@context": "/terms/",
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"@type": [
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"Item"
],
"accession": "IGVFFI2380JUPO",
"aliases": [
"igvf:corces_sequenceFile_ATAC_X043_G7_P043_L006_I1"
],
"assay_titles": [
"10x multiome"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v20",
"content_md5sum": "1184a05fdc4d5727cae09fa5a3c06593",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-20T04:08:33.388594+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS1183UPFU/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1183UPFU",
"assay_term": {
"@id": "/assay-terms/OBI_0002762/",
"term_name": "single-nucleus ATAC-seq"
},
"file_set_type": "experimental data",
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{
"@id": "/multiplexed-samples/IGVFSM2344WXDM/",
"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM2344WXDM",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "mild cognitive impairment",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "Parkinson's disease",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"@type": [
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"OntologyTerm",
"Item"
],
"status": "in progress",
"summary": "cerebral amyloid angiopathy",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"@type": [
"PhenotypeTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "Alzheimer disease",
"term_name": "Alzheimer disease"
}
],
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"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
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"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
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"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
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"term_name": "middle temporal gyrus"
}
],
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"taxa": "Homo sapiens",
"treatments": []
}
],
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},
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"href": "/sequence-files/IGVFFI2380JUPO/@@download/IGVFFI2380JUPO.fastq.gz",
"illumina_read_type": "I1",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
"lane": 6,
"loci_list_for": [],
"maximum_read_length": 8,
"md5sum": "4dfd72d81889fa11bb9179581b5c5363",
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"minimum_read_length": 8,
"quality_metrics": [],
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"s3_uri": "s3://igvf-files/2025/03/20/b56cf2aa-dc87-4e92-bcf1-8b0617429312/IGVFFI2380JUPO.fastq.gz",
"schema_version": "15",
"seqspecs": [],
"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
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"status": "released",
"term_name": "Illumina NovaSeq X"
},
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"status": "preview",
"submitted_by": {
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"title": "Ryan Corces"
},
"submitted_file_name": "Multiome_ATAC_X043_G7_L007_P043_S33_L006_I1_001.fastq.gz",
"summary": "I1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "b56cf2aa-dc87-4e92-bcf1-8b0617429312"
}