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SequenceFile
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IGVFFI2367JOHE
IGVFFI2367JOHE
released
validated
Json view
File Set
IGVFDS6896VSKX
(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:measurement_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S2_R2
md5sum
c21d8fd445c0a885f8d8471bf3c88a17
Content MD5sum
58d1d820497a90e9cadcb7f336ddd281
File Size
2.6 GB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L362_S3_L002_R2_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
2
Illumina Read Type
R2
Average Read Length
90
Read Count
47807242
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM9983LVUX
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI7523LBFP
yaml
seqspec
seqspec of IGVFFI9585YHED, IGVFFI4195HNMX, IGVFFI2367JOHE
Jesse Engreitz, Stanford
1.0 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford