IGVFFI2352XPWU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7439FTUN(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X035_G7_P035_L003_R3

md5sum

9cbcacd442d988767cd7fb4fbc3c007f

Content MD5sum

465dc8d767a80fd1c429028c92ebd3ff

File Size

13 GB

Submitted File Name

Multiome_ATAC_X035_G7_L007_P035_S39_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

235267566

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2603ZBHC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 89 years) substantia nigra tissue; Homo sapiens (female, 84 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples